Information for 5-AATGAAACCC (Motif 21)

G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
Reverse Opposite:
C T A G A C T G A T C G G A C T A C G T A G C T T G A C G T C A G A C T C G A T
p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.618
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets56.6 +/- 24.4bp
Average Position of motif in Background57.0 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AATGAAACCC
-ATTAAA---
 G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AATGAAACCC-
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AATGAAACCC
ACTGAAACCA
 G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AATGAAACCC
CCAATAAAAA--
 A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATGAAACCC
NCYAATAAAA---
 A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATGAAACCC
GCAATAAAAA--
 A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AATGAAACCC-
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATGAAACCC
GGTAATAAAAA--
 A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATGAAACCC
NGCAATTAAA---
 A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AATGAAACCC-
AACCCAATAAAATTCG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A A C G T A C T G C T G A T C G A C T G A T A G C T G A C G A T C A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G