Information for 12-CGTCTAGCCA (Motif 27)

A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G G T A C A C G T T C G A A T C G C T G A A G T C A T C G
p-value:1e-9
log p-value:-2.119e+01
Information Content per bp:1.850
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets43.7 +/- 29.3bp
Average Position of motif in Background42.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CGTCTAGCCA
CGTCTAGACA
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CGTCTAGCCA----
--ACTAGCCAATCA
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGTCTAGCCA-
---BCAGACWA
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CGTCTAGCCA-
-----TGCCAA
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGTCTAGCCA--
---CGTGCCAAG
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CGTCTAGCCA
----CAGCC-
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGTCTAGCCA
VBSYGTCTGG---
 A C G T A C G T A C G T A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGTCTAGCCA
CTGTCTGG---
 A C G T A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGTCTAGCCA-
CNGTCACGCCAC
 A C G T A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGTCTAGCCA-
-ATCACCCCAT
 A T G C T C A G A G C T A T G C A C G T C G T A A C T G A G T C A G T C G T C A A C G T
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T