Information for 1-GTTTTAAGAGSTT (Motif 3)

A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
Reverse Opposite:
C G T A G T C A T A C G A G T C C G A T G T A C A C G T A G C T C G T A C G T A G T C A C G T A G T A C
p-value:1e-10
log p-value:-2.490e+01
Information Content per bp:1.831
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.93%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.7 +/- 17.6bp
Average Position of motif in Background41.9 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAGAGSTT
NTTTTACGAGN--
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAAGAGSTT-
NAATTTTACGAGNTNN
 A C G T A C G T A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTAAGAGSTT-
ANATTTTACGAGNNNN
 A C G T A C G T A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTAAGAGSTT---
NTNNTTAAGTGGTTANN
 A C G T A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTTTAAGAGSTT
-TTTTATKRGG--
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GTTTTAAGAGSTT
---TTGAGTGSTT
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTTTTAAGAGSTT
--BTBRAGTGSN-
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTTTAAGAGSTT---
GTATTGACAGCTNNTT
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T A C G T A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTTTAAGAGSTT
-TTTTATTRGN--
 A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTAAGAGSTT--
AATTTCAAGTGGCTTN
 A C G T A C T G A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A C G T C G A T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A