Information for 1-TGGCCATTTT (Motif 1)

C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T
Reverse Opposite:
C G T A G C T A C G T A C T G A A C G T A C T G C T A G G T A C A G T C G T C A
p-value:1e-11
log p-value:-2.703e+01
Information Content per bp:1.846
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif155.6
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets61.2 +/- 24.1bp
Average Position of motif in Background50.3 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCATTTT-
GCNGCCATCTTG
 A C G T C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGGCCATTTT---
---CCATTGTTYB
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGGCCATTTT--
--NCCATTGTTY
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGCCATTTT-
---CCWTTGTY
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGCCATTTT-
---CCTTTGTT
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGGCCATTTT-----
TGTTCCCATTGTGTACT
 A C G T A C G T C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGGCCATTTT--
--NCCATTGTTC
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCATTTT---
CCTTGCAATTTTTNN
 A C G T A C G T C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

YY2/MA0748.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGGCCATTTT
GTCCGCCATTA-
 A C G T A C G T C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGGCCATTTT---
---CCATTGTTTT
 C A G T C T A G A C T G A G T C A G T C G T C A A G C T A C G T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T