Information for 8-GKHATYCAVAATA (Motif 22)

A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A
Reverse Opposite:
A C G T C G T A A G C T A C G T A C G T A C G T A T C G T C A G C G T A C G A T C A G T G T C A G T A C
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.677
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.91%
Number of Background Sequences with motif487.3
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets53.3 +/- 23.6bp
Average Position of motif in Background49.8 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GKHATYCAVAATA--
------GACAATGNN
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

CEBPA/MA0102.3/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GKHATYCAVAATA
--ATTGCACAATA
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A
A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GKHATYCAVAATA-----
-TNNAGAACAATANATNN
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GKHATYCAVAATA---
-ATGCTAAAAATAGAA
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T
A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GKHATYCAVAATA-
----CCAAAAATAG
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T
A C G T A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GKHATYCAVAATA--
---DCYAAAAATAGM
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GKHATYCAVAATA---
NNTNANAACAATTNNA
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GKHATYCAVAATA----
TCACGGAACAATAGGTG
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GKHATYCAVAATA----
--CTCACACAATGGCGC
 A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GKHATYCAVAATA--------
AATAAAGAACAATAGAATTTCA
 A C G T A C T G C A G T G T C A G C T A C G A T A G T C A T G C C G T A T G C A G T C A C T G A A C G T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A