Information for 3-ATGGTATTAA (Motif 21)

G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A
Reverse Opposite:
G A C T G A C T G T C A C G T A A C G T C G T A A G T C T A G C C G T A C A G T
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.834
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif179.7
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets38.9 +/- 25.3bp
Average Position of motif in Background52.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATGGTATTAA---
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ATGGTATTAA
--GGGATTAA
 G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ATGGTATTAA-
--GGGATTANN
 G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATGGTATTAA
NTAATBNAATTA-
 A C G T A C G T A C G T G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATGGTATTAA-
-GNGGATTAGN
 G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.64
Offset:5
Orientation:forward strand
Alignment:ATGGTATTAA-
-----ATTAAA
 G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATGGTATTAA----
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATGGTATTAA-----
TGAAGGGATTAATCATC
 A C G T A C G T G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATGGTATTAA----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Arid3b/MA0601.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATGGTATTAA----
---ATATTAATTAA
 G T C A C G A T A T C G C T A G A C G T C G T A C G A T A C G T C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A