Information for 2-TGGACTTTGACCT (Motif 3)

A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T
Reverse Opposite:
C G T A C T A G C A T G A C G T A G T C G T C A T C G A C G T A C T A G G A C T A G T C G T A C C G T A
p-value:1e-15
log p-value:-3.615e+01
Information Content per bp:1.789
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif28.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.0 +/- 26.9bp
Average Position of motif in Background57.2 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTTTGACCT-
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT---
TGGACTTTGNNCTNTG
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT--
TGGACTTTGNNCTCN
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT-
TGACCTTTGACCTC
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT-
TGACCTTTGCCCTA
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT-
TGACCTTTGACCTN
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTTTGACCT
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT--
TGACCTTTGCCCTAN
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGACCT-
TGACCTTTGACCCC
 A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTTTGACCT--
GTTGACCTTTGACCTTT
 A C G T A C G T A C G T A C T G C T A G C T G A A G T C A C G T A C G T A C G T C T A G G T C A G T A C A G T C A C G T A C G T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T