Information for 11-GCTACGCGHS (Motif 20)

A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
Reverse Opposite:
A T C G C T A G A G T C A C T G T G A C T C A G A C G T G T C A C T A G A T G C
p-value:1e-7
log p-value:-1.742e+01
Information Content per bp:1.679
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.59%
Number of Background Sequences with motif278.1
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets55.7 +/- 24.4bp
Average Position of motif in Background47.6 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTACGCGHS
GGGTACGTGC-
 A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCTACGCGHS--
GTGCCACGCGACTG
 A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTACGCGHS----
NTTATTCGTCATNC
 A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C A C G T A C G T A C G T A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTACGCGHS
--TACGTGCV
 A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTACGCGHS---
NNTTTANNCGACGNA
 A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C A C G T A C G T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCTACGCGHS
NTTTTACGAGN-
 A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCTACGCGHS--
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PB0154.1_Osr1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCTACGCGHS--
ACATGCTACCTAATAC
 A C G T A C G T A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GCTACGCGHS
NNNNCAACCTTCGNGA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTACGCGHS
-CTAATKGV-
 A T C G G A T C A C G T C G T A A G T C A C T G T G A C A C T G G A T C A T G C
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T