Information for 11-GCAAAACCCG (Motif 19)

A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
Reverse Opposite:
G T A C A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.669e+01
Information Content per bp:1.963
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.7 +/- 31.6bp
Average Position of motif in Background49.3 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCAAAACCCG
GGAAANCCCC
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAAAACCCG
GGAAATCCCC
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAAAACCCG
GGAAATTCCC
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

GRHL1/MA0647.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GCAAAACCCG----
--AAAACCGGTTTT
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAAACCCG
GCCACACCCA
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAAACCCG----
GCAAAACATTACTA
 A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAAAACCCG
AGATGCAATCCC--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAACCCG-
GGGAAATCCCCN
 A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAACCCG-
GGCCACACCCAN
 A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAACCCG--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T