Information for 5-CYCCKGCAGGTGGCAG (Motif 11)

A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A T G C T A G C T C G A A G T C A G T C C G A T A C T G A G T C T G A C A C T G A C T G C T A G A C T G
p-value:1e-10
log p-value:-2.508e+01
Information Content per bp:1.800
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.1 +/- 22.1bp
Average Position of motif in Background40.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CYCCKGCAGGTGGCAG-----
-GCCASCAGGGGGCGCYVNNG
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CYCCKGCAGGTGGCAG
---SDGCAGGTGCNS-
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CYCCKGCAGGTGGCAG--
TGGCCACCAGGGGGCGCTA
 A C G T A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CYCCKGCAGGTGGCAG
DCHCAGCAGGRGGCC-
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CYCCKGCAGGTGGCAG---
TGGCCACCAGGTGGCACTNT
 A C G T A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CYCCKGCAGGTGGCAG
----NNCAGGTGNN--
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CYCCKGCAGGTGGCAG
-CACAGCAGGGGG---
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CYCCKGCAGGTGGCAG
----AACAGGTGT---
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CYCCKGCAGGTGGCAG----
-------AGGTGNCAGACAG
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CYCCKGCAGGTGGCAG
-------AGGTGTCA-
 A G T C G A T C A G T C G T A C A C T G A C T G G T A C C G T A A C T G A C T G A G C T A T C G A T C G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T