Information for 3-TTTATATGAAAAC (Motif 7)

C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T A C G T A C G T A T G C C G T A G C A T T C G A A C G T C T G A C G T A G C T A
p-value:1e-11
log p-value:-2.681e+01
Information Content per bp:1.734
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif208.7
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets41.3 +/- 25.9bp
Average Position of motif in Background52.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTTATATGAAAAC
---ATATGCAAAT
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTATATGAAAAC
CATTGTTATGCAAAT
 A C G T A C G T C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTTATATGAAAAC---
---ATATGCAAATNNN
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTTATATGAAAAC
---TTATGCAAAT
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTTATATGAAAAC
CTTTGTTATGCAAAT
 A C G T A C G T C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTATATGAAAAC-
----AAAGTAAACA
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTATATGAAAAC-
----AAAGTAAACA
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTATATGAAAAC
----TATGCAAAT
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTATATGAAAAC-----
---CAAAGTAAACANNNN
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTTATATGAAAAC----
-TTGTATGCAAATTAGA
 C G A T A C G T A G C T G T C A A G C T C G T A C G A T A T C G T G C A C G T A G T C A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A