Information for 4-TTTTSTAATAGATATG (Motif 4)

C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G
Reverse Opposite:
G T A C C G T A C G A T G T C A A C G T A G T C A C G T C T G A A C G T A G C T C G T A T A C G C G T A C G T A C G T A G C T A
p-value:1e-12
log p-value:-2.877e+01
Information Content per bp:1.722
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.4 +/- 30.9bp
Average Position of motif in Background59.2 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTTSTAATAGATATG
NNNTTTNTAATACNG---
 A C G T A C G T C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTTTSTAATAGATATG
TCTTTANTAATANN----
 A C G T A C G T C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T A C G T A C G T A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:3
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:TTTTSTAATAGATATG-
---------ACATATGG
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

Twist2/MA0633.1/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:TTTTSTAATAGATATG--
--------NACATATGGN
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

BHLHE23/MA0817.1/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:TTTTSTAATAGATATG---
-------AAACATATGTTT
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

Atoh1/MA0461.2/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TTTTSTAATAGATATG--
--------AACATATGTT
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

NFIL3/MA0025.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTTTSTAATAGATATG
TTATGTAACAT-----
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G
C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTTTSTAATAGATATG-
YTAATTRAWWCCAGATGT
 A C G T C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TTTTSTAATAGATATG
RTTATGYAAB-------
 A C G T C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G
T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.52
Offset:8
Orientation:forward strand
Alignment:TTTTSTAATAGATATG--
--------AACATATGTC
 C A G T C G A T C G A T C G A T A T G C C G A T C T G A C G T A G A C T C G T A T C A G G T C A A C G T C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C