Information for 6-MMRMTRGYMCCTTTMT (Motif 11)

G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A C G T A A C T G A C T G C A G T C T A G A G T C A G T C C G T A A C T G A G T C A C G T A C G T
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.791
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.4 +/- 27.8bp
Average Position of motif in Background75.6 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:MMRMTRGYMCCTTTMT--
----NNGCACCTTTCTCC
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

E2F2/MA0864.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:MMRMTRGYMCCTTTMT
AAAATGGCGCCATTTT
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.61
Offset:9
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT-
---------CCTTTGTT
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT
----AGGVNCCTTTGT
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T
A C G T A C G T A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.59
Offset:9
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT---
---------CCTTTGTTTT
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-MMRMTRGYMCCTTTMT-
AAAAATGGCGCCATTTTT
 A C G T G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.58
Offset:9
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT-
---------CCWTTGTY
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.55
Offset:9
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT---
---------YCTTTGTTCC
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.55
Offset:9
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT---
---------CCWTTGTYYB
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.55
Offset:10
Orientation:forward strand
Alignment:MMRMTRGYMCCTTTMT
----------CTTTGT
 G T C A T G C A C T A G G T A C A C G T T C A G A C T G A G T C G T C A G T A C A G T C G C A T A C G T A C G T G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T