Information for 4-TGCAAAGTSCAAA (Motif 9)

C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C T A G A T C G G T C A A G T C A C G T A C G T C G A T A C T G A T G C C G T A
p-value:1e-11
log p-value:-2.644e+01
Information Content per bp:1.848
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.3 +/- 28.8bp
Average Position of motif in Background49.9 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TGCAAAGTSCAAA
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TGCAAAGTSCAAA
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGCAAAGTSCAAA--
GGCAAAAGTCCAATAA
 A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGCAAAGTSCAAA
--CAAAGGTCAG-
 C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCAAAGTSCAAA
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGCAAAGTSCAAA
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Tcf7/MA0769.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGCAAAGTSCAAA--
---AAAGATCAAAGG
 C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAAGTSCAAA
TGGGGCAAAGGTCA--
 A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGCAAAGTSCAAA
GTAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAAGTSCAAA
ANGNAAAGGTCA--
 A C G T C G A T A T C G A G T C G C T A G T C A C G T A A C T G A C G T T A G C A G T C C G T A C G T A C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T