Information for 2-AMAAAGCMRGGKACSM (Motif 6)

G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
Reverse Opposite:
A C T G T A C G A C T G C G A T G T C A G T A C A G T C A G C T C A T G A C T G G T A C A G C T A G C T G A C T A C T G C A G T
p-value:1e-12
log p-value:-2.963e+01
Information Content per bp:1.742
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.5 +/- 26.1bp
Average Position of motif in Background64.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AMAAAGCMRGGKACSM
-CACAGCAGGGGG---
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AMAAAGCMRGGKACSM
DCHCAGCAGGRGGCC-
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AMAAAGCMRGGKACSM
CCACACAGCAGGAGA---
 A C G T A C G T G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AMAAAGCMRGGKACSM
GAGCACAGCAGGACA---
 A C G T A C G T G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AMAAAGCMRGGKACSM
---CAGCC--------
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AMAAAGCMRGGKACSM
CCACACAGCAGGAGA---
 A C G T A C G T G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AMAAAGCMRGGKACSM
DCTCAGCAGG------
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AMAAAGCMRGGKACSM
ACAAAG----------
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---AMAAAGCMRGGKACSM
VRRACAAWGG---------
 A C G T A C G T A C G T G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AMAAAGCMRGGKACSM
--AAGGCAAGTGT---
 G C T A G T A C C G T A C T G A C T G A A C T G A G T C G T A C T C G A C T A G C A T G A C G T C G T A A G T C A T G C G T A C
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T