Information for 4-GGCTGCCVCCTDGCCC (Motif 13)

A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
Reverse Opposite:
A C T G A T C G A C T G A T G C G C T A C T G A A C T G C T A G A C T G A C T G A C T G A G T C G T C A C T A G A G T C A G T C
p-value:1e-10
log p-value:-2.403e+01
Information Content per bp:1.828
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 24.8bp
Average Position of motif in Background40.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCTGCCVCCTDGCCC
-GCCGCCATCTTG---
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCTGCCVCCTDGCCC
---CGCCCCCTGACA-
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCTGCCVCCTDGCCC
CTGTCTGTCACCT-----
 A C G T A C G T A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCTGCCVCCTDGCCC
-GCNGCCATCTTG---
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGCCVCCTDGCCC
TGTCTGDCACCT-----
 A C G T A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGCTGCCVCCTDGCCC
--NTGCCCTTGGGCGN
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGCTGCCVCCTDGCCC
--CTGGCAGNCTGCCA
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGCTGCCVCCTDGCCC
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGCTGCCVCCTDGCCC
---TGCCCCCGGGCA-
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C
A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGCTGCCVCCTDGCCC--
--TTGGCANNNTGCCAAG
 A C T G C T A G A G T C A C G T A C T G A G T C A G T C T A G C A G T C A G T C A G C T C A G T A T C G A G T C A T G C A G T C A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G