Information for 6-AAAGGGCAAAGGCCAA (Motif 18)

C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G C T A G A G T C A G T C A C G T A C G T A C G T A C T G G T A C A G T C A G T C C G A T A C G T A C G T
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.884
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 29.2bp
Average Position of motif in Background45.5 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA-
AAAGGTCAAAGGTCAAC
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
-TAGGGCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
AGAGTCCAAAGTCCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AAAGGGCAAAGGCCAA
CANAGNNCAAAGTCCA-
 A C G T C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
-GAGGTCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AAAGGGCAAAGGCCAA
-TGGGGCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
-GAGGTCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
GTAGGGCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
-GGGGTCAAAGGTCA-
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AAAGGGCAAAGGCCAA
AAAGATCAAAGG----
 C G T A C G T A C G T A A C T G C T A G A C T G A G T C C G T A C G T A C G T A A C T G A C T G A G T C G T A C C G T A C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T A C G T