Information for 3-CGCCTCAGTACACTCA (Motif 5)

A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C T G C G A T A C T G A C G T C T G A A G T C G A C T C T A G C G T A A C T G A C T G A G T C A C T G
p-value:1e-4
log p-value:-1.123e+01
Information Content per bp:1.922
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.8 +/- 24.0bp
Average Position of motif in Background68.5 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGCCTCAGTACACTCA
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A C G T A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CGCCTCAGTACACTCA--
-------AGCCACTCAAG
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CGCCTCAGTACACTCA-
-------AASCACTCAA
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGCCTCAGTACACTCA
-GCCTCAGGGCAT---
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CGCCTCAGTACACTCA
NNNVCTGWGYAAACASN
 A C G T A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:CGCCTCAGTACACTCA-
-------MRSCACTYAA
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.47
Offset:8
Orientation:forward strand
Alignment:CGCCTCAGTACACTCA--
--------RSCACTYRAG
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--CGCCTCAGTACACTCA
NNNACCTCATTATCNTN-
 A C G T A C G T A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-CGCCTCAGTACACTCA
TATCATTAGAACGCT--
 A C G T A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.47
Offset:8
Orientation:reverse strand
Alignment:CGCCTCAGTACACTCA--
--------NSCACTYVAV
 A G T C C T A G G T A C A G T C A C G T A G T C C G T A A C T G A G C T C G T A G T A C C G T A A G T C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G