Information for 1-GAGAAAGACA (Motif 2)

A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G A C G T A T G C A C G T A C G T C G A T A G T C A C G T A T G C
p-value:1e-5
log p-value:-1.346e+01
Information Content per bp:1.881
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif63.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets37.4 +/- 18.5bp
Average Position of motif in Background52.2 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAGAAAGACA
AGGTGHCAGACA
 A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAGAAAGACA-
AGGTGNCAGACAG
 A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAGAAAGACA
GAAAGTGAAAGT--
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GAGAAAGACA-
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGAAAGACA-
----TTGACAG
 A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGAAAGACA-
--AAAAGTCAA
 A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAGAAAGACA---
---CCAGACRSVB
 A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGAAAGACA-----
CAAATCCAGACATCACA
 A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAGAAAGACA-
---BCAGACWA
 A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PRDM1/MA0508.1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGAAAGACA
AGAAAGTGAAAGTGA
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A G T C A C G T A A T C G C G T A A T G C C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A