Information for 15-CTGGCCCTTAGCA (Motif 31)

A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G A G T C A G T C C G T A A C T G
p-value:1e-4
log p-value:-9.269e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets19.0 +/- 0.0bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGGCCCTTAGCA---------
TGTGACCCTTAGCAACCGATTAA
 A C G T A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGGCCCTTAGCA
---BCMATTAG--
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTGGCCCTTAGCA-----
---TACCATAGCAACGGT
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGGCCCTTAGCA-----
---CCGCATAGCAACGGA
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTGGCCCTTAGCA
--GGCCATTAAC-
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGGCCCTTAGCA
-CGCCCCCTGACA
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTGGCCCTTAGCA---
-TGTTKCCTAGCAACM
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T A C G T
A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCCCTTAGCA
GYCTGGYYTNTGTCA
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGGCCCTTAGCA--
CTTGGCANNNTGCCAA
 A C G T A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGGCCCTTAGCA
--GGCVGTTR---
 A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T C G T A A C T G A G T C C G T A
A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T A C G T