Information for 2-MAAAACAASTCAGCCC (Motif 2)

G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
Reverse Opposite:
C T A G C T A G A T C G G A T C A C G T A C T G G T C A A T C G G A C T A G C T T A C G C G A T A G C T C G A T A C G T C A G T
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.620
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif118.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets51.5 +/- 23.6bp
Average Position of motif in Background48.1 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----MAAAACAASTCAGCCC
AACACCAAAACAAAGGA----
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----MAAAACAASTCAGCCC
ATATCAAAACAAAACA----
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.50
Offset:0
Orientation:forward strand
Alignment:MAAAACAASTCAGCCC
CCAATCAA--------
 G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----MAAAACAASTCAGCCC
CGACCCAATCAACGGTG---
 A C G T A C G T A C G T A C G T G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.46
Offset:7
Orientation:reverse strand
Alignment:MAAAACAASTCAGCCC---
-------GCTCCGCCCMCY
 G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-MAAAACAASTCAGCCC
AAAAACCAATTAAGAA-
 A C G T G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:MAAAACAASTCAGCCC
----ACAAAGGNBCCT
 G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.45
Offset:5
Orientation:reverse strand
Alignment:MAAAACAASTCAGCCC---
-----NAGCCCCGCCCCCN
 G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.45
Offset:1
Orientation:reverse strand
Alignment:MAAAACAASTCAGCCC
-AAAACAAAGG-----
 G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-MAAAACAASTCAGCCC---
AGTAAACAAAAAAGAACANN
 A C G T G T C A G T C A C G T A T C G A C G T A A T G C T C G A C T G A T A G C A C G T T G A C T C G A C T A G A T G C A G T C A G T C A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A