Information for 3-TGCATATAATCAGCCA (Motif 4)

A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
Reverse Opposite:
G A C T A C T G A C T G A G T C C G A T C T A G C G T A C G A T C G A T C G T A A C G T G T C A A C G T C T A G A G T C G T C A
p-value:1e-12
log p-value:-2.833e+01
Information Content per bp:1.740
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 30.1bp
Average Position of motif in Background57.9 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGCATATAATCAGCCA
ATTTGCATACAATGG----
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCATATAATCAGCCA
CAATTGCAAAAATAT-----
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGCATATAATCAGCCA
ATATGCAAATNNN------
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGCATATAATCAGCCA
CGAAGCACACAAAATA---
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TGCATATAATCAGCCA
TNNATTATGCATANNTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGCATATAATCAGCCA-
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGCATATAATCAGCCA
ATGMATATDC-------
 A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TGCATATAATCAGCCA
TACATGTGCACATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TGCATATAATCAGCCA
TTATGCAAAT---------
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TGCATATAATCAGCCA
ATATGCAAAT---------
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A G T C G T A G C A T C G T A C G T A C G A T A G T C C G T A T A C G A G T C G T A C C T G A
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T