Information for 3-CCAGACACCA (Motif 21)

A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G A C G T A C T G A C G T A G T C C G A T A C T G C T A G
p-value:1e-6
log p-value:-1.386e+01
Information Content per bp:1.932
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif55.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.4 +/- 20.5bp
Average Position of motif in Background52.8 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACACCA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCAGACACCA
CCAGACAG--
 A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCAGACACCA
CCAGACRSVB
 A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCAGACACCA
BCAGACWA--
 A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACACCA
ATGCCAGACN---
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCAGACACCA----
ATAAATGACACCTATCA
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACACCA
AGGTGHCAGACA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCAGACACCA
--TGACACCT
 A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAGACACCA
VGCTGWCAVB-
 A C G T A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAGACACCA
-TTGACAG--
 A G T C A G T C C G T A A C T G C G T A A G T C C G T A A G T C A G T C C G T A
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T