Information for 12-TGGVTGGCTGTGA (Motif 21)

A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A G T C C G T A A C T G A T G C A T G C C G T A A G T C A G T C A G T C G T C A
p-value:1e-7
log p-value:-1.773e+01
Information Content per bp:1.809
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif40.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets46.3 +/- 25.5bp
Average Position of motif in Background45.1 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TGGVTGGCTGTGA
------GCTGTG-
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGGVTGGCTGTGA---
NNNNTGCCAGTGATTG
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGGVTGGCTGTGA
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGGVTGGCTGTGA
BTGABTGACAGS--
 A C G T A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGGVTGGCTGTGA-
----TGGGTGTGGC
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGGVTGGCTGTGA--
---NTGGGTGTGGCC
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T T G A C C G A T A C T G A C T G A C T G G A C T A C T G A C G T A C T G A C T G G A T C G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGGVTGGCTGTGA
NTGATTGACAGN--
 A C G T A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGGVTGGCTGTGA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Klf1/MA0493.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGGVTGGCTGTGA--
----TGGGTGTGGCN
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G A C T G A C T G G A C T A C T G C A G T C T A G A C T G A G T C G A T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGGVTGGCTGTGA---
------GCAGTGATTT
 A C G T A C T G C T A G T C A G A C G T A T C G A T C G G T A C C G A T A C T G A C G T A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T