Information for 2-GCGCCCTCTGCTG (Motif 2)

A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G
Reverse Opposite:
T A G C T C G A A T C G A T G C C G T A A C T G T C G A C A T G A C T G A T C G G T A C C T A G A T G C
p-value:1e-16
log p-value:-3.753e+01
Information Content per bp:1.737
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif233.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets46.3 +/- 25.9bp
Average Position of motif in Background52.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCTCTGCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCTCTGCTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCTCTGCTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCGCCCTCTGCTG
--GCCATCTGTT-
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCGCCCTCTGCTG
--ACCATCTGTT-
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G
A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCGCCCTCTGCTG---
-GGCCYCCTGCTGDGH
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCTCTGCTG
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCGCCCTCTGCTG--
---CCCCCTGCTGTG
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGCCCTCTGCTG
--RCCATMTGTT-
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G
A C G T A C G T C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCGCCCTCTGCTG-
--GCCAGCTGBTNB
 A T C G A G T C C A T G A T G C A G T C G T A C A G C T A G T C G C A T T A C G A T G C A C G T A T C G A C G T
A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C