Information for 7-AATGCATTTT (Motif 20)

C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T
p-value:1e-6
log p-value:-1.517e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.2 +/- 11.3bp
Average Position of motif in Background60.3 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AATGCATTTT----
CCTTGCAATTTTTNN
 A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AATGCATTTT-
-ATGAATATTC
 C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AATGCATTTT-
-ATGMATATDC
 C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

ZNF143/MA0088.2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AATGCATTTT-----
CAATGCATTGTGGGTA
 A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AATGCATTTT
CCTTAATNGNTTTT
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AATGCATTTT---
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATGCATTTT------
-ATGCATWATGCATRW
 C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATGCATTTT
GGGATTGCATNN-
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATGCATTTT-
TAATTNVATTAN
 A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AATGCATTTT
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T