Information for 2-GAATTATTTATTT (Motif 5)

A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
Reverse Opposite:
C G T A G T C A C G T A A C G T C G T A C T G A G T C A C G A T C G T A G T C A A C G T A C G T A G T C
p-value:1e-13
log p-value:-3.168e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.7 +/- 20.0bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GAATTATTTATTT
TGAATTATGCAT--
 A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GAATTATTTATTT-
AATTAATTAATTAATTC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

Lhx3/MA0135.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAATTATTTATTT
AAATTAATTAATC
 A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAATTATTTATTT
ATGAATAATTAATG-
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAATTATTTATTT
-GAATGTTTGTTT
 A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GAATTATTTATTT-
GATTAATTAATTAAGTC
 A C G T A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GAATTATTTATTT
----TGTTTATTT
 A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAATTATTTATTT
-AATTATT-----
 A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GAATTATTTATTT---
--NTTATTGATTTTTT
 A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

POU4F3/MA0791.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAATTATTTATTT-
ATGCATAATTAATGAG
 A C G T A C G T A C T G C G T A C G T A A C G T A C G T C G T A A C G T A G C T A C G T C G T A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G