Information for 25-VAGGAGATGAGCTCCT (Motif 46)

T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G C T A G C G T A A C T G G T A C A C G T A T G C C G T A A C G T G T A C A C G T A G T C A G T C A G C T A T C G
p-value:1e-6
log p-value:-1.554e+01
Information Content per bp:1.777
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.2 +/- 28.2bp
Average Position of motif in Background24.2 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----VAGGAGATGAGCTCCT
NNNNNBAGATAWYATCTVHN
 A C G T A C G T A C G T A C G T T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.54
Offset:10
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT
----------GCTTCC
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:VAGGAGATGAGCTCCT
AAGGATATNTN-----
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT
-ADGGYAGYAGCATCT
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
A C G T C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT-
--AGAAATGACTTCCCT
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T A C G T
A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.54
Offset:10
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT
----------GCTCCG
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--VAGGAGATGAGCTCCT
NACAGGAAAT--------
 A C G T A C G T T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT
NAGNACANNNTGTNCT
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:VAGGAGATGAGCTCCT
AGGGGGATTAGCTGCC
 T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PB0125.1_Gata3_2/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---VAGGAGATGAGCTCCT---
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T T A G C C T G A C T A G A C T G C G T A A C T G G T C A C G A T A T C G G T C A A C T G A G T C A C G T A G T C A G T C A G C T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A