Information for 7-CCTGGTAACA (Motif 43)

A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
Reverse Opposite:
G A C T A C T G A C G T C A G T T C G A T G A C G T A C G C T A A C T G T C A G
p-value:1e-7
log p-value:-1.789e+01
Information Content per bp:1.659
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.16%
Number of Background Sequences with motif1511.2
Percentage of Background Sequences with motif3.07%
Average Position of motif in Targets47.4 +/- 26.5bp
Average Position of motif in Background48.8 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCTGGTAACA-
SCCTAGCAACAG
 A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCTGGTAACA
CSTGGGAAAD
 A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

PB0109.1_Bbx_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCTGGTAACA----
NNNNCTGTTAACNNTNN
 A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A A C G T A C G T A C G T A C G T
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCTGGTAACA--
TACCCTAGTTACCGA
 A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCTGGTAACA
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCTGGTAACA
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCTGGTAACA
TTGCCATGGCAACC
 A C G T A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CCTGGTAACA------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCTGGTAACA
TTGCCATGGCAACN
 A C G T A C G T A C G T A C G T A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTGGTAACA-
GCTCGTAAAAA
 A G T C T G A C C G A T C A T G A C T G A G C T G C T A T G C A T G A C C T G A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A