Information for 1-GTAMMMASAAGGG (Motif 4)

C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C G T A T C G A C G T A C G T A C G T A C T G A C G T C G T A G A T C
p-value:1e-13
log p-value:-3.168e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 27.3bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GTAMMMASAAGGG
-----AACAAAGG
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTAMMMASAAGGG
---VRAACAATGG
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GTAMMMASAAGGG
-----RACAAWGG
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTAMMMASAAGGG
NDGTAAACARRN---
 A C G T A C G T C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTAMMMASAAGGG
---AAAACAAAGG
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTAMMMASAAGGG
---VRRACAAWGG
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTAMMMASAAGGG-
----RAACAATGGN
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GTAMMMASAAGGG
CAAAAGTAAACAAAG---
 A C G T A C G T A C G T A C G T A C G T C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTAMMMASAAGGG
AAGTAAACAAA----
 A C G T A C G T C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G
C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GTAMMMASAAGGG-
----GAACAATGGN
 C A T G A C G T C G T A G T A C G T C A G T C A C G T A A T G C C G T A C G T A A C T G A C T G C T A G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G