Information for 19-GGAATCCATTCTT (Motif 39)

A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T
Reverse Opposite:
C G T A C G T A A T C G C G T A C G T A A C G T A C T G A C T G C G T A A G C T A C G T A G T C A G T C
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.947
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 17.5bp
Average Position of motif in Background27.1 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAATCCATTCTT----
-ANNTCCATTGTTCNNN
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GGAATCCATTCTT--
-----CCATTGTTYB
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GGAATCCATTCTT-
----NCCATTGTTC
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GGAATCCATTCTT-
-----CCATTGTTC
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGAATCCATTCTT
AGGGAAGTCATTTCT
 A C G T A C G T A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGAATCCATTCTT-
----NCCATTGTTY
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GGAATCCATTCTT
-----CCTTTGTT
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGAATCCATTCTT-----
-NNNTCCTTTGTTCTNNN
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGAATCCATTCTT-----
-GTATCTATTGTTCTTTA
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGAATCCATTCTT---
NNCATTCATTCATNNN
 A C T G A C T G C G T A C T G A A C G T A G T C A G T C C G T A A C G T A C G T A T G C C G A T A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T