Information for 11-YCACYTKRRRGCCAYA (Motif 19)

G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
Reverse Opposite:
C G A T C T A G A C G T A C T G A C T G A G T C A G C T A G C T G A C T G T A C C G T A C T G A C T A G A C G T A C T G C T A G
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 24.1bp
Average Position of motif in Background62.2 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-3/MA0672.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YCACYTKRRRGCCAYA
ACCACTTGAA-------
 A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:YCACYTKRRRGCCAYA
CCACTTGAA-------
 G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:YCACYTKRRRGCCAYA----
VCAKCTGGNNNCCAGMTGBN
 G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----YCACYTKRRRGCCAYA
ATAACCACTTGAAAATT---
 A C G T A C G T A C G T A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:YCACYTKRRRGCCAYA---
--------AAACCACAGAN
 G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-YCACYTKRRRGCCAYA
ACCACTTAA--------
 A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-YCACYTKRRRGCCAYA
ACCACTTAA--------
 A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:YCACYTKRRRGCCAYA
----TTTGGCGCCAAA
 G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
A C G T A C G T A C G T A C G T G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YCACYTKRRRGCCAYA
NNCACCTGNN-------
 A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--YCACYTKRRRGCCAYA
MRSCACTYAA--------
 A C G T A C G T G A T C A G T C G T C A A G T C A G C T A C G T C A G T C T G A C T G A C T G A A C T G G T A C A G T C C G T A G A T C C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T