Information for 3-AATGGCTATT (Motif 8)

C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
Reverse Opposite:
C T G A C T G A G C A T G T C A C A T G A T G C A T G C G C T A C G A T A G C T
p-value:1e-10
log p-value:-2.455e+01
Information Content per bp:1.648
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.28%
Number of Background Sequences with motif805.7
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets48.8 +/- 27.2bp
Average Position of motif in Background50.0 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTATT
TGATTGGCTANN
 A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATGGCTATT
TAATGGCGGNC
 A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTATT
CCGATTGGCT---
 A C G T A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCTATT
GTTAATGGCC---
 A C G T A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AATGGCTATT
---NGCTN--
 C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AATGGCTATT
CCTTAATNGNTTTT
 A C G T A C G T A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATGGCTATT
-TTGGCA---
 C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTATT
CTAATCGNT---
 A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCTATT
NTAATKGTTT--
 A C G T A C G T C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATGGCTATT
-TWGTCTGV-
 C T G A G C T A C G A T T A C G A T C G G T A C A C G T C G T A G A C T G A C T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T