Information for 5-AMACTGTAAAYAA (Motif 6)

C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A
Reverse Opposite:
A G C T A C G T C T G A A C G T A G C T G C A T C G T A G A T C C G T A T A C G G A C T C A G T C G A T
p-value:1e-13
log p-value:-3.196e+01
Information Content per bp:1.640
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.1 +/- 18.7bp
Average Position of motif in Background60.9 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0019.1_Foxl1_1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
TAAATGTAAACAAAGGT
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
AAAAAGTAAACAAAGAC
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

Foxk1/MA0852.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
AAAATGTAAACAAACAG
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
AAAATGTAAACAAACAG
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:AMACTGTAAAYAA---
-CAAAGTAAACANNNN
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AMACTGTAAAYAA--
NCWRWGTAAACANSV
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AMACTGTAAAYAA-
--TATGTAAACANG
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T
A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
AAAAAGTAAACAAACAC
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AMACTGTAAAYAA----
AAAAAGTAAACAAACAC
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

Foxa2/MA0047.2/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AMACTGTAAAYAA
NCTAAGTAAACA-
 C G T A G T C A C G T A A G T C C G A T C T A G G C A T C G T A C T G A T C G A G A C T T G C A T C G A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T