Information for 1-GCASACAYMACAC (Motif 1)

A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G A C G T A C G T T C A G A C G T A C T G A C G T T A G C A C G T A C T G A G T C
p-value:1e-9
log p-value:-2.209e+01
Information Content per bp:1.875
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.94%
Number of Background Sequences with motif18.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.8 +/- 26.4bp
Average Position of motif in Background33.4 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCASACAYMACAC
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCASACAYMACAC
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCASACAYMACAC
TTTGCACACGGCAC--
 A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCASACAYMACAC
CCAGACRSVB---
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCASACAYMACAC
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

TBX5/MA0807.1/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GCASACAYMACAC--
-------TCACACCT
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCASACAYMACAC
CCAGACAG-----
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCASACAYMACAC-----
--AGACCCCCCACGAAGC
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C G T A A T G C G T A C A T G C T A G C A G T C T G A C C T G A A G T C C A T G C G T A G C T A C A T G A T G C

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCASACAYMACAC--
-------TCACACCT
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

TBX4/MA0806.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCASACAYMACAC--
-------TCACACCT
 A C T G A G T C C G T A A T C G C G T A A G T C G T C A A G T C G T C A C G T A A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T