Information for 6-GTAAGTGCAT (Motif 7)

A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G A G T C G T C A A G T C C A G T A C G T G T C A A T G C
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.844
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif83.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets36.8 +/- 19.1bp
Average Position of motif in Background51.8 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGC--
 A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGCTT
 A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGGN-
 A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTAAGTGCAT
TTAAGTGGT-
 A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GTAAGTGCAT--
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTAAGTGCAT
TTRAGTGSYK
 A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTAAGTGCAT
CAGGTAAGTAT--
 A C G T A C G T A C G T A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTAAGTGCAT
NTCAAGTGGN-
 A C G T A T C G A C G T T G C A G T C A T C A G C A G T C T A G A T G C C G T A A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T