Information for 3-AGGTGGCAGCATT (Motif 2)

C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
Reverse Opposite:
C G T A C G T A A C G T C T A G A T G C A C G T A C T G A G T C A T G C G C T A A G T C A G T C G A C T
p-value:1e-26
log p-value:-6.199e+01
Information Content per bp:1.766
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif50.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets44.8 +/- 29.5bp
Average Position of motif in Background46.2 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTGGCAGCATT
AGGTGTCA-----
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGCATT
GGTTGGCAT----
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------AGGTGGCAGCATT
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGGTGGCAGCATT
-VBTGWCAGCB--
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGTGGCAGCATT
ARNTGACA-----
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGGTGGCAGCATT
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTGGCAGCATT
CAAGATGGCGGC---
 A C G T A C G T C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGGTGGCAGCATT--
---NGTCAGCANTTT
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T A C G T A C G T
A C G T A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGGTGGCAGCATT
-TGAGTCAGCA--
 C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGTGGCAGCATT-
ADGGYAGYAGCATCT
 A C G T C G T A C T A G C T A G C G A T A T C G C T A G A G T C C G T A A T C G A G T C T C G A C G A T G A C T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T