Information for 1-GAAAATAATA (Motif 5)

A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A
Reverse Opposite:
A C G T C G T A A C G T A C G T C G T A A C G T A C G T A G C T A C G T A T G C
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.32%
Number of Background Sequences with motif32.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets46.3 +/- 22.0bp
Average Position of motif in Background47.8 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAAAATAATA
---AATAATT
 A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GAAAATAATA---
TAAGATTATAATACGG
 A C G T A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAAAATAATA-----
AAAAATAACAAACGG
 A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAAAATAATA---
TATAATTATAATATTC
 A C G T A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAAAATAATA---
TTTAATTATAATTAAG
 A C G T A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAAAATAATA---
NNTNANAACAATTNNA
 A C G T A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAAAATAATA
--AGATAAGA
 A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAAAATAATA-----
TNNAGAACAATANATNN
 A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAAATAATA
GTAAACAAT-
 A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAAAATAATA-----
TAGTGAACAATAGATTT
 A C G T A C G T A T C G C G T A C T G A T C G A C G T A A C G T C G T A C G T A A C G T G T C A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T