Information for 8-RAGGGAAAGACAGCKT (Motif 16)

C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
Reverse Opposite:
C T G A G T A C A T C G A G T C C G A T A C T G A G C T A G T C A C G T C A G T A C G T A G T C A G T C A G T C C G A T A G T C
p-value:1e-10
log p-value:-2.499e+01
Information Content per bp:1.752
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.2 +/- 20.2bp
Average Position of motif in Background38.3 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RAGGGAAAGACAGCKT
AGGTGNCAGACAG---
 C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGGGAAAGACAGCKT
GAAAGTGAAAGT------
 A C G T A C G T C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RAGGGAAAGACAGCKT
AGGTGHCAGACA----
 C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RAGGGAAAGACAGCKT
AGAAAGTGAAAGTGA----
 A C G T A C G T A C G T C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RAGGGAAAGACAGCKT
NNNNGGGGGAAGANGG---
 A C G T A C G T A C G T C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RAGGGAAAGACAGCKT---
NANTGGAAAAANTGAGTCAN
 A C G T C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RAGGGAAAGACAGCKT
AATGGAAAAT------
 C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RAGGGAAAGACAGCKT
CSTGGGAAAD-------
 A C G T C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RAGGGAAAGACAGCKT
NNTGGAAANN------
 C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RAGGGAAAGACAGCKT
AATGGAAAAT------
 C T A G C G T A C T A G C T A G A C T G G T C A G T C A C G T A C T A G C T G A G T A C C G T A A C T G T A G C A C T G A G C T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T A C G T A C G T A C G T