Information for 7-AGACAAGTTA (Motif 23)

C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
Reverse Opposite:
A C G T C G T A C G T A A G T C A C G T A C G T A C T G C G A T A G T C A C G T
p-value:1e-8
log p-value:-1.954e+01
Information Content per bp:1.942
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 30.7bp
Average Position of motif in Background58.5 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mecom/MA0029.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGACAAGTTA---
AAGATAAGATAACA
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGACAAGTTA
AAGGCAAGTGT
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGACAAGTTA-----
GAAAACTAGTTAACATC
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACAAGTTA
BCAGACWA----
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGACAAGTTA--
--ACTAGTTAAC
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGACAAGTTA-----
GAAGACCAATTAGCGCT
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A A C G T A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGACAAGTTA
AGATAAGA--
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGACAAGTTA
NNATAAGGNN
 C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Hes2/MA0616.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGACAAGTTA
TAACGACACGTGC
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGACAAGTTA
NNGAGATAAGA--
 A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A C T G A C G T A C G T G T C A
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T