Information for 4-CCTCTTCAATCTT (Motif 7)

G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
Reverse Opposite:
C T G A C G T A A T C G T G C A G C A T C A G T A C T G C G T A C T G A T C A G C G T A T C A G C T A G
p-value:1e-11
log p-value:-2.608e+01
Information Content per bp:1.656
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.19%
Number of Background Sequences with motif505.3
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets56.0 +/- 26.7bp
Average Position of motif in Background48.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTTCAATCTT------
GCCTCCTCCMTCWGACTGKS
 A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTCAATCTT
TAAGCCACTTGAATTT-
 A C G T A C G T A C G T A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCTTCAATCTT
-GYCATCMATCAT
 G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTCAATCTT
TAAGCCACTTGAAATT-
 A C G T A C G T A C G T A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTTCAATCTT
NSCACTYVAV----
 A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCTCTTCAATCTT-
--CCATCAATCAAA
 G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTCAATCTT
TAAGCCACTTGAAATT-
 A C G T A C G T A C G T A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTCTTCAATCTT
--TCATCAATCA-
 G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCTCTTCAATCTT
CCACTTGAA----
 G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTCTTCAATCTT
RSCACTYRAG----
 A C G T G A T C A G T C G A C T A G T C A G C T G C A T T G A C G T C A C G T A A C G T A T G C G C A T A G C T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T