Information for 25-GCACAAACTAAAC (Motif 30)

C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G C T C G T A A C T G A C G T C G A T A C G T A C T G A C G T A C T G A G T C
p-value:1e-3
log p-value:-8.928e+00
Information Content per bp:1.933
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.6 +/- 27.3bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCACAAACTAAAC
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCACAAACTAAAC
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCACAAACTAAAC
RGGGCACTAACY----
 A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCACAAACTAAAC---
-CAAAATCGAAACTAA
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T A C G T A C G T
A C G T T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCACAAACTAAAC-
--AGAAACGAAAGT
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCACAAACTAAAC-
--NCTAAGTAAACA
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T
A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCACAAACTAAAC-
-----AAATAAACA
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCACAAACTAAAC-
----AAAGTAAACA
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCACAAACTAAAC-
----AAAGTAAACA
 C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------GCACAAACTAAAC
CAGATGTGCACATACGT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A A G T C C G T A C G T A C G T A A G T C A C G T C T G A C G T A G T C A A G T C
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T