Information for 1-CAASAAGRGCAAA (Motif 1)

A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A C T G A G T C G A T C G T A C A C G T A G C T A T C G A C G T A C G T C T A G
p-value:1e-13
log p-value:-3.189e+01
Information Content per bp:1.782
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.1 +/- 18.9bp
Average Position of motif in Background54.3 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAASAAGRGCAAA
---CAAGGHCANV
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAASAAGRGCAAA------
--AGAAGAACAAAGGACTA
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAASAAGRGCAAA---
-AAAAATAACAAACGG
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T A C G T
A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAASAAGRGCAAA--
---AAAGATCAAAGG
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAASAAGRGCAAA-----
---AAAGATCAAAGGGTT
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAASAAGRGCAAA------
--ATAAGAACAAAGGACTA
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CAASAAGRGCAAA--
-----AAAACAAAGG
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAASAAGRGCAAA
----AAGGTCAC-
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAASAAGRGCAAA
--TCAAGGTCAT-
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A
A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAASAAGRGCAAA
--TCAAGGTCATA
 A G T C C G T A T G C A A T G C C T G A C G T A A C T G C T A G C T A G A G T C C G T A G C T A C G T A
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A