Information for 5-CAAATATTTGTAT (Motif 12)

A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T
Reverse Opposite:
C G T A A C G T C T G A A G T C G T C A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.504e+01
Information Content per bp:1.945
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 16.2bp
Average Position of motif in Background53.7 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAATATTTGTAT-
CTAATATTGCTAAA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAATATTTGTAT-
CTAATATTGCTAAA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CAAATATTTGTAT--
-----ATTTGCATAA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAAATATTTGTAT--
-----ATTTGCATAT
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Foxd3/MA0041.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAAATATTTGTAT
-GAATGTTTGTTT
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAAATATTTGTAT--
--TTCATTTGCATAT
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CAAATATTTGTAT-
-----ATTTGCATA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

FOXC1/MA0032.2/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAAATATTTGTAT-
---ATATTTACATA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CAAATATTTGTAT-
-----ATTTGCATA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

FOXB1/MA0845.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAAATATTTGTAT-
---ATATTTACATA
 A G T C C G T A C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G C T G T C A C G A T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A