Information for 3-CACASACAMTGAGCWC (Motif 4)

T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
Reverse Opposite:
C T A G C G A T A C T G A T G C C G A T G A T C C G T A A C T G A C G T A C T G G A C T T A G C A C G T A C T G A C G T A C T G
p-value:1e-8
log p-value:-2.028e+01
Information Content per bp:1.731
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets41.0 +/- 23.3bp
Average Position of motif in Background23.3 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0177.1_Sox7_2/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CACASACAMTGAGCWC
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CACASACAMTGAGCWC
-BCAGACWA-------
 T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CACASACAMTGAGCWC
AGCGGCACACACGCAA-----
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CACASACAMTGAGCWC
TBGCACGCAA-------
 A C G T T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACASACAMTGAGCWC
GCCACACCCA--------
 A C G T A C G T T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CACASACAMTGAGCWC
-CCAGACRSVB-----
 T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CACASACAMTGAGCWC
----GACAATGNN---
 T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CACASACAMTGAGCWC
CGAAGCACACAAAATA---
 A C G T A C G T A C G T T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CACASACAMTGAGCWC
--CACGCA--------
 T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CACASACAMTGAGCWC
-CCAGACAG-------
 T A G C C G T A A G T C C G T A A T C G C T G A A G T C C G T A G T A C G A C T C T A G G C T A T A C G A G T C C G T A A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T