Information for 6-AYATMMTAAM (Motif 16)

C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C
Reverse Opposite:
A C T G A C G T A C G T C G T A A C T G A C G T C G T A A C G T C T A G A C G T
p-value:1e-3
log p-value:-9.010e+00
Information Content per bp:1.852
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.23%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets50.0 +/- 27.0bp
Average Position of motif in Background33.3 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AYATMMTAAM--
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AYATMMTAAM----
AAATAAGAAAAAAC
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AYATMMTAAM----
NANTATTATAATTNNN
 A C G T A C G T C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AYATMMTAAM-
--GCAATAAAA
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AYATMMTAAM--
--GTCATAAAAN
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AYATMMTAAM--
--GTCGTAAAAT
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AYATMMTAAM----
CAAACAACAACACCT
 A C G T C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AYATMMTAAM---
-NGYCATAAAWCH
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AYATMMTAAM--
--GTCGTAAAAA
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AYATMMTAAM-----
ATGTCACAACAACAC
 C G T A A G T C C G T A A C G T G T C A G T A C A C G T C G T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C