Information for 8-GGCCGTAAAT (Motif 13)

A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T
Reverse Opposite:
C G T A A G C T A C G T A C G T G T C A T A G C A T C G A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.919e+01
Information Content per bp:1.878
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.9 +/- 28.2bp
Average Position of motif in Background51.0 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGCCGTAAAT---
GGCCATAAATCAC
 A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGCCGTAAAT--
GGCCATAAATCA
 A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGCCGTAAAT
GGCGGGAAAH
 A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCCGTAAAT--
GGCCATAAATCA
 A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCCGTAAAT--
NGYCATAAAWCH
 A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGTAAAT-
TGGCGGGAAAHB
 A C G T A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGCCGTAAAT----
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCCGTAAAT
CWGGCGGGAA--
 A C G T A C G T A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGCCGTAAAT
BTKGGCGGGAAA-
 A C G T A C G T A C G T A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCCGTAAAT----
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C T G A C T G A G T C T A G C A T C G A C G T C G T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T