Information for 20-RTGCATRYATGCA (Motif 40)

C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A
Reverse Opposite:
A C G T C T A G A G T C T C G A A G C T C T G A A G C T C T G A A G C T C T A G A G T C T C G A G A T C
p-value:1e-8
log p-value:-1.914e+01
Information Content per bp:1.738
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif178.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets41.7 +/- 27.9bp
Average Position of motif in Background52.3 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:RTGCATRYATGCA-------
---AAAATATGCATAATAAA
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:RTGCATRYATGCA------
--NTNTATGTGCACATNNN
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:RTGCATRYATGCA------
------ATATGCAAATNNN
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:RTGCATRYATGCA-
----GHATATKCAT
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RTGCATRYATGCA--
AYATGYATATGCATR
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:RTGCATRYATGCA---
------ATATGCAAAT
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RTGCATRYATGCA-----
-TAAATACATGTAAAATT
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RTGCATRYATGCA------
--NNGTATGTGCACATNNN
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:RTGCATRYATGCA---
------TTATGCAAAT
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PH0083.1_Irx3_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RTGCATRYATGCA-----
-AAAATACATGTAATACT
 C T A G A G C T C T A G G A T C C T G A A G C T C T G A G A C T C T G A A G C T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T