Information for 17-CATACTAACCATCATC (Motif 38)

A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
Reverse Opposite:
A T C G C G T A A C G T A C T G C G T A A C G T A C T G A C T G A C G T C A G T C G T A A C T G G C A T C G T A A C G T A C T G
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.922
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 23.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATACTAACCATCATC-
--NNNTAACAATTATAN
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C A C G T
A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATACTAACCATCATC-
--TAGTGATCATCATTA
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C A C G T
A C G T A C G T G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CATACTAACCATCATC
-NNACTTACCTN----
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:4
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CATACTAACCATCATC
-----AAACMATTAN-
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CATACTAACCATCATC
---GYCATCMATCAT-
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CATACTAACCATCATC-----
----TCACCCATCAATAAACA
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PB0045.1_Myb_1/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CATACTAACCATCATC--
-ATGGAAACCGTTATTTT
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C A C G T A C G T
A C G T G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CATACTAACCATCATC
------GGCCATTAAC
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.48
Offset:7
Orientation:forward strand
Alignment:CATACTAACCATCATC
-------CCAATCAA-
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:CATACTAACCATCATC
-----NAACAAT----
 A G T C G T C A A C G T C G T A A G T C C G A T G T C A C G T A A G T C A G T C C G T A A C G T A G T C C G T A C G A T A T G C
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T