Information for 20-AAAGCATKGTCTAAAG (Motif 41)

G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
Reverse Opposite:
G T A C A G C T C A G T G A C T G T C A A C T G G C T A A G T C G T C A G C T A G C A T A C T G G T A C C A G T C A G T C G A T
p-value:1e-3
log p-value:-7.678e+00
Information Content per bp:1.599
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.49
Offset:4
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG
----CTTTGT------
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.48
Offset:3
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG--
---CCATTGTATGCAAAT
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:AAAGCATKGTCTAAAG
ANTCCTTTGTCTNNNN
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:AAAGCATKGTCTAAAG
-AAGCTTG--------
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.47
Offset:5
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG
-----TAGGTGTGAAG
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:AAAGCATKGTCTAAAG
NNNCCATTGTGTNAN-
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.46
Offset:3
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG
---CCWTTGTYYB---
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.46
Offset:3
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG
---CCATTGTTTT---
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-AAAGCATKGTCTAAAG
CACAGCAGGGGG-----
 A C G T G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.45
Offset:1
Orientation:forward strand
Alignment:AAAGCATKGTCTAAAG
-CAGCC----------
 G C T A G C T A G C T A A C T G G T A C C G T A C G A T A C G T C T A G C G A T T G A C C A G T C G T A G C T A C T G A A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T